I don't know if the Modine's come equipped with an internal aquastat or whether you'd have to add an external strap-on for the near-coil plumbing, but it's only function is to turn the blower on/off, not the pump. If the pump isn't pumping hot water to the coil, the plumbing will be cool, and the blower won't run. After the pump stops pumping the blower will run until the coil is cool enough that the aquastat turns it off. There are dozens (hundreds?) of aquastats of different adjustment ranges, contact ratings, etc. If the Modine doesn't come pre-configured with one, it's not hard to install a strap-0n type on the incoming water plumbing to the coil unit.
The thermostats only tell the zone relays or zone controller when there's a call for heat- the rest is up to you. A common configuration is to have the zone relay turn on the pump, to deliver hot water from the boiler to the zone radiation or coil. You can do this with one pump or two, with separate zone-relays or a two-zone zone controller.